TransFlow: a modular framework for assembling and assessing accurate de novo transcriptomes in non-model organisms

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dc.contributor.authorSeoane, Pedro
dc.contributor.authorEspigares, Marina
dc.contributor.authorCarmona, Rosario
dc.contributor.authorPolonio, Álvaro
dc.contributor.authorQuintana, Julia
dc.contributor.authorCretazzo, Enrico
dc.contributor.authorBota, Josefina
dc.contributor.authorPérez-García, Alejandro
dc.contributor.authorAlché, Juan de Dios
dc.contributor.authorGómez, Luis
dc.contributor.authorClaros, M Gonzalo
dc.date.accessioned2023-12-12T09:33:09Z
dc.date.available2023-12-12T09:33:09Z
dc.date.issued2018-11-20
dc.descriptionThis work was supported by co-funding by the European Union through the European Regional Development Fund (ERDF) 2014-2020 “Programa Operativo de Crecimiento Inteligente” together with Spanish AEI “Agencia Estatal de Investigación” (BFU2016-77243-P, RTC-2015-4181-2, RTC-2016-4824-2, AGL2013-41939-R and AGL2016-76216-C2-1-R), AEI-INIA (RTA2013-00023-C02 and RTA2013-00068-C03), and Junta de Andalucía (P2011-CVI-7487), as well as CSIC grant 201540E065.es
dc.description.abstractThe advances in high-throughput sequencing technologies are allowing more and more de novo assembling of transcriptomes from many new organisms. Some degree of automation and evaluation is required to warrant reproducibility, repetitivity and the selection of the best possible transcriptome. Workflows and pipelines are becoming an absolute requirement for such a purpose, but the issue of assembling evaluation for de novo transcriptomes in organisms lacking a sequenced genome remains unsolved. An automated, reproducible and flexible framework called TransFlow to accomplish this task is described.es
dc.identifier.citationSeoane P, Espigares M, Carmona R, Polonio Á, Quintana J, Cretazzo E, et al. TransFlow: a modular framework for assembling and assessing accurate de novo transcriptomes in non-model organisms. BMC bioinformatics. 2018;19 Suppl 14:416.es
dc.identifier.doi10.1186/s12859-018-2384-yes
dc.identifier.urihttps://hdl.handle.net/10115/27136
dc.language.isoenges
dc.publisherBMCes
dc.rightsAttribution 4.0 International
dc.rights.accessRightsinfo:eu-repo/semantics/openAccesses
dc.rights.urihttps://creativecommons.org/licenses/by/4.0/
dc.titleTransFlow: a modular framework for assembling and assessing accurate de novo transcriptomes in non-model organismses
dc.typeinfo:eu-repo/semantics/articlees

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